STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB45525.1Lysine 2,3-aminomutase. (414 aa)    
Predicted Functional Partners:
AKB45524.1
Beta-lysine acetyltransferase.
  
 0.937
AKB45629.1
Proline 2-methylase for pyrrolysine biosynthesis.
    
 0.870
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.820
AKB45628.1
Pyrrolysine synthetase.
    
  0.802
AKB45773.1
Chemotaxis protein methyltransferase CheR.
   
   0.778
eif5a
Eukaryotic translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
     
 0.466
Your Current Organism:
Methanosarcina vacuolata
NCBI taxonomy Id: 1434123
Other names: M. vacuolata Z-761, Methanosarcina vacuolata Z-761
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.