naa30 protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

naa30

N(alpha)-acetyltransferase 30, NatC catalytic subunit. (387 aa)

Predicted Functional Partners:

naa35

0.998

naa38

0.989

snrpe

0.822

snrpb

0.708

rimkla

0.692

got2

0.661

asns

0.656

naa50

0.634

arfrp1

0.596

naa40

0.588

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
arfrp1	naa30	ENSSPAP00000018690	ENSSPAP00000000631	ADP-ribosylation factor related protein 1.	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	0.596
arfrp1	naa35	ENSSPAP00000018690	ENSSPAP00000002522	ADP-ribosylation factor related protein 1.	N(alpha)-acetyltransferase 35, NatC auxiliary subunit.	0.539
asns	got2	ENSSPAP00000009570	ENSSPAP00000012363	Asparagine synthetase [glutamine-hydrolyzing].	Aspartate aminotransferase.	0.950
asns	naa30	ENSSPAP00000009570	ENSSPAP00000000631	Asparagine synthetase [glutamine-hydrolyzing].	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	0.656
got2	asns	ENSSPAP00000012363	ENSSPAP00000009570	Aspartate aminotransferase.	Asparagine synthetase [glutamine-hydrolyzing].	0.950
got2	naa30	ENSSPAP00000012363	ENSSPAP00000000631	Aspartate aminotransferase.	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	0.661
naa30	arfrp1	ENSSPAP00000000631	ENSSPAP00000018690	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	ADP-ribosylation factor related protein 1.	0.596
naa30	asns	ENSSPAP00000000631	ENSSPAP00000009570	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	Asparagine synthetase [glutamine-hydrolyzing].	0.656
naa30	got2	ENSSPAP00000000631	ENSSPAP00000012363	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	Aspartate aminotransferase.	0.661
naa30	naa35	ENSSPAP00000000631	ENSSPAP00000002522	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	N(alpha)-acetyltransferase 35, NatC auxiliary subunit.	0.998
naa30	naa38	ENSSPAP00000000631	ENSSPAP00000018108	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.989
naa30	naa40	ENSSPAP00000000631	ENSSPAP00000023039	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae).	0.588
naa30	naa50	ENSSPAP00000000631	ENSSPAP00000020314	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	N(alpha)-acetyltransferase 50, NatE catalytic subunit.	0.634
naa30	rimkla	ENSSPAP00000000631	ENSSPAP00000014748	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	Ribosomal modification protein rimK-like family member A.	0.692
naa30	snrpb	ENSSPAP00000000631	ENSSPAP00000029230	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	Small nuclear ribonucleoprotein-associated protein.	0.708
naa30	snrpe	ENSSPAP00000000631	ENSSPAP00000021667	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.822
naa35	arfrp1	ENSSPAP00000002522	ENSSPAP00000018690	N(alpha)-acetyltransferase 35, NatC auxiliary subunit.	ADP-ribosylation factor related protein 1.	0.539
naa35	naa30	ENSSPAP00000002522	ENSSPAP00000000631	N(alpha)-acetyltransferase 35, NatC auxiliary subunit.	N(alpha)-acetyltransferase 30, NatC catalytic subunit.	0.998
naa35	naa38	ENSSPAP00000002522	ENSSPAP00000018108	N(alpha)-acetyltransferase 35, NatC auxiliary subunit.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.994
naa35	naa40	ENSSPAP00000002522	ENSSPAP00000023039	N(alpha)-acetyltransferase 35, NatC auxiliary subunit.	N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae).	0.526