STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phyhd1Phytanoyl-CoA dioxygenase domain containing 1. (292 aa)    
Predicted Functional Partners:
ENSSPAP00000021969
Uncharacterized protein.
   
 
 0.854
pex7
Peroxisomal biogenesis factor 7.
    
 0.832
nup188
Nucleoporin 188.
 
      0.761
acaa1
Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.720
LOC103360104
Serine--pyruvate aminotransferase.
    
 0.709
agxt
Serine--pyruvate aminotransferase.
    
 0.709
pex10
Peroxisomal biogenesis factor 10.
   
 
 0.697
agps
Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.
  
 0.691
pex5l
Peroxisomal biogenesis factor 5-like a.
    
 0.690
pex5
Peroxisomal biogenesis factor 5.
    
 0.690
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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