STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJ78_07735WD_REPEATS_REGION domain-containing protein. (1407 aa)    
Predicted Functional Partners:
AJ78_05757
SPRY domain-containing protein.
    
 0.893
AJ78_01746
WD_REPEATS_REGION domain-containing protein.
    
 0.892
AJ78_06434
TPR_REGION domain-containing protein.
    
 0.890
AJ78_01416
Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.
    
 0.881
AJ78_03240
Histone H3-like centromeric protein cse-4.
    
 0.804
AJ78_03196
Histone H3.
    
 0.804
AJ78_03195
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.797
AJ78_05244
Nsp1_C domain-containing protein.
    
 0.778
AJ78_05703
Histone H2A; Belongs to the histone H2A family.
   
  0.758
AJ78_08510
Ubiquitin-60S ribosomal protein L40.
    
  0.737
Your Current Organism:
Emergomyces pasteurianus
NCBI taxonomy Id: 1447872
Other names: E. pasteurianus Ep9510, Emergomyces pasteuriana Ep9510, Emergomyces pasteurianus Ep9510, Emmonsia pasteuriana Ep9510, Emmonsia pasteuriana UAMH 9510
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.