STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13117.1Peptidase M48 family. (287 aa)    
Predicted Functional Partners:
AMK14474.1
Pantothenate kinase CoaA.
  
    0.863
AMK13118.1
Bifunctional hexulose-6-phosphate synthase/ribonuclease regulator.
     
 0.770
AMK13351.1
Ribosomal protein L4P Rpl4p.
  
 0.761
AMK14387.1
Inositol monophosphatase/ATP-NAD kinase.
   
 0.754
AMK14269.1
alanyl-tRNA synthetase AlaS.
  
    0.736
AMK13733.1
2-methylcitrate synthase/citrate synthase II.
  
 0.678
AMK13125.1
Fumarate hydratase alpha subunit.
  
 
 0.664
AMK13126.1
Fumarate hydratase beta subunit.
  
 
 0.664
AMK14005.1
Rubredoxin.
    
 0.631
AMK14396.1
Glutamate synthase domain-containing protein.
    
 0.631
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.