STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR04354.1Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)    
Predicted Functional Partners:
AJR04954.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 
0.925
AJR04353.1
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.897
AJR04355.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.853
AJR04349.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
AJR04348.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.770
AJR04347.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.758
AJR04350.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.755
AJR04358.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.724
AJR04489.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
AJR03715.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.648
Your Current Organism:
Siansivirga zeaxanthinifaciens
NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.