STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS57560.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
ALS57561.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.790
ALS57559.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
ALS57558.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
ALS56405.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.752
ALS57557.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.714
ALS57556.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
ALS57562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.554
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.518
ALS58368.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.485
ALS56934.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.463
Your Current Organism:
Rathayibacter toxicus
NCBI taxonomy Id: 145458
Other names: ATCC 49908, CIP 104617, Clavibacter toxicus, DSM 7488, ICMP 9525, JCM 9669, NCPPB 3552, R. toxicus, strain CS14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.