STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL19517.1Phage shock protein C (PspC) family protein. (580 aa)    
Predicted Functional Partners:
SCL30714.1
Phage shock protein A (PspA) family protein.
  
 
 0.991
SCL19512.1
Phage shock protein C (PspC) family protein.
 
  
 0.934
SCL19521.1
Hypothetical protein.
       0.829
SCL24479.1
Putative membrane protein.
  
    0.827
SCL35067.1
PAS domain S-box-containing protein.
   
 
 0.690
SCL19508.1
Two component transcriptional regulator, LuxR family.
 
  
 0.668
SCL25027.1
Phage shock protein C (PspC) family protein.
 
   
0.658
SCL19526.1
Phosphatidylserine decarboxylase.
       0.632
SCL17367.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
 
     0.554
SCL15362.1
Hypothetical protein.
  
     0.535
Your Current Organism:
Micromonospora nigra
NCBI taxonomy Id: 145857
Other names: ATCC 33088, DSM 43818, IFO 16103, JCM 8973, M. nigra, Micromonospora halophytica subsp. nigra, Micromonospora halophytica var. nigra, NBRC 16103, NCIMB 2225, NRRL 3097
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