STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ04048.1cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (197 aa)    
Predicted Functional Partners:
SFP89118.1
Adenylate cyclase, class 3.
   
 0.846
SFQ52395.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
  
  0.792
SFP71181.1
Glutamate synthase (NADH) large subunit.
    
 0.761
SFP52973.1
Signal transduction histidine kinase.
   
 0.669
SFQ52175.1
Adenylate cyclase, class 3.
   
 0.586
SFQ04074.1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  0.581
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.554
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.552
SFQ09401.1
Adenylate and Guanylate cyclase catalytic domain-containing protein.
   
 0.546
SFQ03969.1
Tetratricopeptide repeat-containing protein.
   
   0.539
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.