node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABM71105.1 | ABM71106.1 | A9601_18221 | A9601_18231 | Conserved hypothetical protein. | Zinc metallopeptidase M20/M25/M40 family; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]. | 0.823 |
ABM71105.1 | ABM71107.1 | A9601_18221 | A9601_18241 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.823 |
ABM71105.1 | ruvB | A9601_18221 | A9601_18251 | Conserved hypothetical protein. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.823 |
ABM71105.1 | smpB | A9601_18221 | A9601_18261 | Conserved hypothetical protein. | tmRNA binding protein SmpB; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switc [...] | 0.670 |
ABM71105.1 | thiC | A9601_18221 | A9601_18211 | Conserved hypothetical protein. | ThiC family; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.446 |
ABM71106.1 | ABM71105.1 | A9601_18231 | A9601_18221 | Zinc metallopeptidase M20/M25/M40 family; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]. | Conserved hypothetical protein. | 0.823 |
ABM71106.1 | ABM71107.1 | A9601_18231 | A9601_18241 | Zinc metallopeptidase M20/M25/M40 family; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]. | Conserved hypothetical protein. | 0.824 |
ABM71106.1 | ruvB | A9601_18231 | A9601_18251 | Zinc metallopeptidase M20/M25/M40 family; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.823 |
ABM71106.1 | smpB | A9601_18231 | A9601_18261 | Zinc metallopeptidase M20/M25/M40 family; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]. | tmRNA binding protein SmpB; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switc [...] | 0.609 |
ABM71106.1 | thiC | A9601_18231 | A9601_18211 | Zinc metallopeptidase M20/M25/M40 family; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]. | ThiC family; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.579 |
ABM71107.1 | ABM71105.1 | A9601_18241 | A9601_18221 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.823 |
ABM71107.1 | ABM71106.1 | A9601_18241 | A9601_18231 | Conserved hypothetical protein. | Zinc metallopeptidase M20/M25/M40 family; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]. | 0.824 |
ABM71107.1 | polA | A9601_18241 | A9601_13151 | Conserved hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.422 |
ABM71107.1 | ruvB | A9601_18241 | A9601_18251 | Conserved hypothetical protein. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.823 |
ABM71107.1 | smpB | A9601_18241 | A9601_18261 | Conserved hypothetical protein. | tmRNA binding protein SmpB; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switc [...] | 0.605 |
ABM71107.1 | thiC | A9601_18241 | A9601_18211 | Conserved hypothetical protein. | ThiC family; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.579 |
mfd | polA | A9601_10301 | A9601_13151 | Transcriptional-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.594 |
mfd | ruvA | A9601_10301 | A9601_09181 | Transcriptional-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | Putative holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.575 |
mfd | ruvB | A9601_10301 | A9601_18251 | Transcriptional-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.582 |
polA | ABM71107.1 | A9601_13151 | A9601_18241 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Conserved hypothetical protein. | 0.422 |