STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ97911.1Alkane 1-monooxygenase. (377 aa)    
Predicted Functional Partners:
SHK31640.1
Hypothetical protein.
  
     0.752
SHJ42217.1
Hypothetical protein.
  
     0.697
SHI94042.1
Reductive dehalogenase.
  
 
 0.688
SHJ55976.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.688
SHJ40339.1
Capsular polysaccharide export protein.
  
     0.672
SHI76971.1
Hypothetical protein.
  
     0.655
SHK31689.1
Cytochrome P450.
  
  
  0.650
SHK19959.1
Sulfotransferase family protein.
  
     0.635
SHJ97883.1
A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.633
SHK19921.1
Core-2/I-Branching enzyme.
  
     0.617
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.