STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK39288.1Peptide/nickel transport system substrate-binding protein. (548 aa)    
Predicted Functional Partners:
SHJ26425.1
Peptide/nickel transport system permease protein.
  
  0.875
SHJ26456.1
Peptide/nickel transport system permease protein.
  
  0.864
SHJ26493.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.823
SHJ89623.1
Peptide/nickel transport system permease protein.
 
  0.666
SHJ89662.1
Peptide/nickel transport system permease protein.
 
  0.627
SHJ71915.1
Fatty acid desaturase.
  
     0.623
SHJ90414.1
Peptide/nickel transport system permease protein.
 
  0.620
SHJ75063.1
Dipeptide transport system permease protein.
 
  0.615
SHJ71442.1
Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.605
SHJ90381.1
Peptide/nickel transport system permease protein.
 
  0.605
Your Current Organism:
Pseudopelagicola gijangensis
NCBI taxonomy Id: 1470563
Other names: CECT 8540, DSM 100564, KCTC 42049, P. gijangensis, Pseudopelagicola gijangensis Kim et al. 2014, Rhodobacteraceae bacterium YSS-7, strain YSS-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.