STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBSD_0100Unannotated protein. (164 aa)    
Predicted Functional Partners:
MBSD_0566
Unannotated protein.
   
 0.858
MBSD_0645
Unannotated protein.
   
 0.858
MBSD_0099
Unannotated protein.
       0.701
MBSD_n2258
Unannotated protein.
  
  
 0.537
ychF
Unannotated protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.528
tdh
Unannotated protein; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
   
  0.470
MBSD_n0342
Unannotated protein.
  
 
 0.463
sucC
Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
     
 0.458
MBSD_0288
Unannotated protein.
  
 
 0.456
MBSD_0285
Unannotated protein.
 
 
  0.413
Your Current Organism:
Mizugakiibacter sediminis
NCBI taxonomy Id: 1475481
Other names: DSM 27098, M. sediminis, Mizugakiibacter sediminis Kojima et al. 2014, NBRC 109608, Xanthomonadaceae bacterium skMP5, strain skMP5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.