STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glmS-2Glutamate mutase subunit S; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate). (137 aa)    
Predicted Functional Partners:
glmE
Glutamate mutase subunit E; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
 
  0.999
SDL30465.1
Methylaspartate ammonia-lyase.
 
  
  0.983
SDL38301.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.960
SDL29129.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.937
SDL30419.1
Conserved hypothetical protein.
 
     0.935
scpC
4-hydroxybutyrate CoA-transferase.
  
 
 0.869
SDL00754.1
Glutamate dehydrogenase (NAD); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.863
glnA
L-glutamine synthetase.
     
 0.843
mngR
Transcriptional regulator, GntR family.
 
     0.834
SDL33509.1
butyryl-CoA dehydrogenase.
  
 
 0.670
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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