STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KEY86561.1Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
KEY86560.1
Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.827
KEY86559.1
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.822
KEY86562.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.807
KEY86563.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
KEY86558.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
KEY84810.1
Metal ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.491
KEY86601.1
Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.407
Your Current Organism:
Pseudomonas capeferrum
NCBI taxonomy Id: 1495066
Other names: P. capeferrum, Pseudomonas sp. WCS358, strain WCS358
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