STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_03025DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (872 aa)    
Predicted Functional Partners:
ER57_03040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.913
ER57_17615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.828
ER57_03035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.810
ER57_16190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.806
ER57_03030
DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
ER57_03050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
ER57_03045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.519
ER57_06430
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.436
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.