STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03904Sugar ABC transporter, permease protein. (270 aa)    
Predicted Functional Partners:
U27_03905
Sugar ABC transporter, permease protein.
  0.979
U27_04555
Binding-protein-dependent transport systems inner membrane component.
  
 0.935
U27_05718
Binding-protein-dependent transport systems inner membrane component.
 
  0.915
U27_00831
Binding-protein-dependent transport systems inner membrane component.
 
  0.914
U27_06531
ABC transporter, membrane spanning protein (Sugar).
 
  0.914
U27_03511
Binding-protein-dependent transport systems inner membrane component.
 
  0.913
U27_04348
Hypothetical protein.
 
  0.913
U27_01938
Sugar ABC transporter, permease protein, putative.
 
  0.912
U27_02757
Binding-protein-dependent transport systems inner membrane component.
 
  0.911
U27_04964
Hypothetical protein.
 
  0.911
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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