STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_04657Lytic transglycosylase catalytic. (425 aa)    
Predicted Functional Partners:
U27_05603
Peptidase C14, caspase catalytic subunit p20.
   
 
 0.836
U27_00105
Pentapeptide repeat protein.
   
 
 0.828
U27_00209
Pentapeptide repeat protein.
   
 
 0.828
U27_00362
Pentapeptide repeat protein.
   
 
 0.828
U27_03030
Pentapeptide repeat protein.
   
 
 0.828
U27_03842
Hypothetical protein.
   
 
 0.828
U27_05957
Pentapeptide repeat protein.
   
 
 0.828
U27_05258
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
  
  0.715
U27_01881
Organic solvent tolerance protein.
  
  
 0.706
U27_02949
Putative aspartyl/asparaginyl beta-hydroxylase; Aspartate beta-hydroxylase, peptide-aspartate beta-dioxygenase.
 
  
  0.674
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.