STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG17519.1Hypothetical protein. (504 aa)    
Predicted Functional Partners:
SMG17511.1
Hypothetical protein.
       0.773
SMG42123.1
Uncharacterized membrane protein YeiB.
  
     0.624
SMG17529.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.515
SMG17537.1
Peptide/nickel transport system permease protein.
       0.515
SMG17547.1
Peptide/nickel transport system permease protein.
       0.515
SMG17552.1
Peptide/nickel transport system substrate-binding protein.
       0.515
SMG45799.1
Fibronectin type III domain-containing protein.
  
  
  0.468
SMG17558.1
Glycolate oxidase.
       0.437
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.