STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQX79340.1Pirin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family. (316 aa)    
Predicted Functional Partners:
AQX79341.1
AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.542
BWO91_04490
Radical SAM protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
AQX79338.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
AQX79339.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
AQX79342.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.451
Your Current Organism:
Plantibacter flavus
NCBI taxonomy Id: 150123
Other names: Clavibacter sp. P297/02, DSM 14012, JCM 12144, LMG 19919, LMG:19919, NBRC 103081, P. flavus, Plantibacter flavus Behrendt et al. 2002, VKM Ac-2504, strain P 297/02
Server load: low (4%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.