STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF08278.1Signal transduction histidine kinase. (303 aa)    
Predicted Functional Partners:
atoS
Signal transduction histidine-protein kinase AtoS.
 
 0.977
KNF08279.1
Hypothetical protein.
 
  0.968
kdpD
Sensor protein KdpD.
 
      0.900
vanR-5
Regulatory protein VanR.
  0.867
vanR-3
Regulatory protein VanR.
  0.865
vanR-2
Regulatory protein VanR.
  0.864
KNF09040.1
Hypothetical protein.
 
  0.864
phoP-2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
  0.861
gtcR
Response regulator GtcR.
  0.861
KNF08200.1
Signal transduction response regulator.
 
  0.850
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.