STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GQ55_3G430000Usp domain-containing protein. (171 aa)    
Predicted Functional Partners:
GQ55_9G410100
Uncharacterized protein.
    
 0.883
GQ55_9G139300
Uncharacterized protein.
    
 0.828
GQ55_1G042900
Uncharacterized protein.
    
 0.817
GQ55_1G377800
Uncharacterized protein.
    
 0.817
GQ55_6G039400
Uncharacterized protein.
   
 0.810
GQ55_2G007700
Uncharacterized protein.
    
 0.759
GQ55_1G196100
TPR_REGION domain-containing protein.
    
 0.737
GQ55_3G146700
CPSF_A domain-containing protein.
    
 0.692
GQ55_9G058300
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.664
GQ55_9G192000
Uncharacterized protein.
    
 0.657
Your Current Organism:
Panicum hallii
NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.