STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_09945rRNA 2'-O-methyltransferase fibrillarin. (334 aa)    
Predicted Functional Partners:
B0A48_15242
Nucleolar protein 56.
   
 0.999
B0A48_08452
Nucleolar protein 58.
   
 0.999
B0A48_03697
40S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.999
B0A48_03869
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 0.999
B0A48_04415
Nucleolar protein 58.
   
 0.999
B0A48_04516
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.999
B0A48_03057
Nucleolar protein 56.
   
 0.999
B0A48_10036
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
  0.998
B0A48_13686
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
  0.997
B0A48_07257
Uncharacterized protein.
   
 0.997
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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