B0A48_08338 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_08338

Zn(2)-C6 fungal-type domain-containing protein. (674 aa)

Predicted Functional Partners:

B0A48_08032

0.602

B0A48_02941

0.602

B0A48_08070

0.595

B0A48_02902

0.595

B0A48_17017

0.584

B0A48_13079

0.584

B0A48_13630

0.584

B0A48_13631

0.584

B0A48_11506

0.584

B0A48_11507

0.584

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_02902	B0A48_02941	A0A1V8TLY3	A0A1V8TLP7	Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
B0A48_02902	B0A48_08032	A0A1V8TLY3	A0A1V8T1F6	Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
B0A48_02902	B0A48_08338	A0A1V8TLY3	A0A1V8T563	Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.	Zn(2)-C6 fungal-type domain-containing protein.	0.595
B0A48_02941	B0A48_02902	A0A1V8TLP7	A0A1V8TLY3	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.	0.993
B0A48_02941	B0A48_08070	A0A1V8TLP7	A0A1V8T147	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.993
B0A48_02941	B0A48_08338	A0A1V8TLP7	A0A1V8T563	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Zn(2)-C6 fungal-type domain-containing protein.	0.602
B0A48_08032	B0A48_02902	A0A1V8T1F6	A0A1V8TLY3	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.	0.993
B0A48_08032	B0A48_08070	A0A1V8T1F6	A0A1V8T147	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.993
B0A48_08032	B0A48_08338	A0A1V8T1F6	A0A1V8T563	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Zn(2)-C6 fungal-type domain-containing protein.	0.602
B0A48_08070	B0A48_02941	A0A1V8T147	A0A1V8TLP7	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
B0A48_08070	B0A48_08032	A0A1V8T147	A0A1V8T1F6	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.993
B0A48_08070	B0A48_08338	A0A1V8T147	A0A1V8T563	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Zn(2)-C6 fungal-type domain-containing protein.	0.595
B0A48_08338	B0A48_02902	A0A1V8T563	A0A1V8TLY3	Zn(2)-C6 fungal-type domain-containing protein.	Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.	0.595
B0A48_08338	B0A48_02941	A0A1V8T563	A0A1V8TLP7	Zn(2)-C6 fungal-type domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.602
B0A48_08338	B0A48_08032	A0A1V8T563	A0A1V8T1F6	Zn(2)-C6 fungal-type domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.602
B0A48_08338	B0A48_08070	A0A1V8T563	A0A1V8T147	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.595
B0A48_08338	B0A48_11506	A0A1V8T563	A0A1V8SW14	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.584
B0A48_08338	B0A48_11507	A0A1V8T563	A0A1V8SW28	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.584
B0A48_08338	B0A48_13079	A0A1V8T563	A0A1V8SN91	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.584
B0A48_08338	B0A48_13630	A0A1V8T563	A0A1V8SPL9	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.584