B0A48_07491 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_07491

Uncharacterized protein. (621 aa)

Predicted Functional Partners:

B0A48_05683

0.786

B0A48_06831

0.677

B0A48_09266

0.669

B0A48_07038

0.657

B0A48_02583

0.657

B0A48_14945

0.643

B0A48_11159

0.643

B0A48_01265

0.633

B0A48_00189

0.633

B0A48_11755

0.618

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_00189	B0A48_02583	A0A1V8TU04	A0A1V8TP11	DNA polymerase.	Uncharacterized protein.	0.996
B0A48_00189	B0A48_05683	A0A1V8TU04	A0A1V8TBL6	DNA polymerase.	Uncharacterized protein.	0.617
B0A48_00189	B0A48_07038	A0A1V8TU04	A0A1V8T7W3	DNA polymerase.	Uncharacterized protein.	0.996
B0A48_00189	B0A48_07491	A0A1V8TU04	A0A1V8T687	DNA polymerase.	Uncharacterized protein.	0.633
B0A48_00189	B0A48_11755	A0A1V8TU04	A0A1V8ST67	DNA polymerase.	ERCC4 domain-containing protein.	0.704
B0A48_01265	B0A48_02583	A0A1V8TSR2	A0A1V8TP11	DNA polymerase.	Uncharacterized protein.	0.996
B0A48_01265	B0A48_05683	A0A1V8TSR2	A0A1V8TBL6	DNA polymerase.	Uncharacterized protein.	0.617
B0A48_01265	B0A48_07038	A0A1V8TSR2	A0A1V8T7W3	DNA polymerase.	Uncharacterized protein.	0.996
B0A48_01265	B0A48_07491	A0A1V8TSR2	A0A1V8T687	DNA polymerase.	Uncharacterized protein.	0.633
B0A48_01265	B0A48_11755	A0A1V8TSR2	A0A1V8ST67	DNA polymerase.	ERCC4 domain-containing protein.	0.704
B0A48_02583	B0A48_00189	A0A1V8TP11	A0A1V8TU04	Uncharacterized protein.	DNA polymerase.	0.996
B0A48_02583	B0A48_01265	A0A1V8TP11	A0A1V8TSR2	Uncharacterized protein.	DNA polymerase.	0.996
B0A48_02583	B0A48_07491	A0A1V8TP11	A0A1V8T687	Uncharacterized protein.	Uncharacterized protein.	0.657
B0A48_05683	B0A48_00189	A0A1V8TBL6	A0A1V8TU04	Uncharacterized protein.	DNA polymerase.	0.617
B0A48_05683	B0A48_01265	A0A1V8TBL6	A0A1V8TSR2	Uncharacterized protein.	DNA polymerase.	0.617
B0A48_05683	B0A48_06831	A0A1V8TBL6	A0A1V8T9X5	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.891
B0A48_05683	B0A48_07491	A0A1V8TBL6	A0A1V8T687	Uncharacterized protein.	Uncharacterized protein.	0.786
B0A48_05683	B0A48_09266	A0A1V8TBL6	A0A1V8STW8	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.898
B0A48_06831	B0A48_05683	A0A1V8T9X5	A0A1V8TBL6	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.891
B0A48_06831	B0A48_07491	A0A1V8T9X5	A0A1V8T687	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.677