B0A48_01538 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_01538

mRNA cap guanine-N7 methyltransferase. (545 aa)

Predicted Functional Partners:

B0A48_15857

0.966

B0A48_04930

0.966

B0A48_18474

0.893

B0A48_18606

0.893

B0A48_16383

0.804

B0A48_12319

0.804

B0A48_05060

0.804

B0A48_03545

0.804

B0A48_17309

0.795

B0A48_18745

0.782

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_01538	B0A48_03545	A0A1V8TPL1	A0A1V8TKQ5	mRNA cap guanine-N7 methyltransferase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.804
B0A48_01538	B0A48_04930	A0A1V8TPL1	A0A1V8TE64	mRNA cap guanine-N7 methyltransferase.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.966
B0A48_01538	B0A48_05060	A0A1V8TPL1	A0A1V8TEJ0	mRNA cap guanine-N7 methyltransferase.	Uncharacterized protein.	0.804
B0A48_01538	B0A48_12319	A0A1V8TPL1	A0A1V8SRR5	mRNA cap guanine-N7 methyltransferase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.804
B0A48_01538	B0A48_15857	A0A1V8TPL1	A0A1V8S9T4	mRNA cap guanine-N7 methyltransferase.	Nuclear cap-binding protein subunit 2.	0.966
B0A48_01538	B0A48_16383	A0A1V8TPL1	A0A1V8SE25	mRNA cap guanine-N7 methyltransferase.	Uncharacterized protein.	0.804
B0A48_01538	B0A48_17309	A0A1V8TPL1	A0A1V8SC71	mRNA cap guanine-N7 methyltransferase.	Uncharacterized protein.	0.795
B0A48_01538	B0A48_18474	A0A1V8TPL1	A0A1V8S822	mRNA cap guanine-N7 methyltransferase.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.893
B0A48_01538	B0A48_18606	A0A1V8TPL1	A0A1V8S8C3	mRNA cap guanine-N7 methyltransferase.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.893
B0A48_01538	B0A48_18745	A0A1V8TPL1	A0A1V8S8B3	mRNA cap guanine-N7 methyltransferase.	mRNA_cap_enzyme domain-containing protein.	0.782
B0A48_03545	B0A48_01538	A0A1V8TKQ5	A0A1V8TPL1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	mRNA cap guanine-N7 methyltransferase.	0.804
B0A48_03545	B0A48_04930	A0A1V8TKQ5	A0A1V8TE64	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
B0A48_03545	B0A48_05060	A0A1V8TKQ5	A0A1V8TEJ0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.966
B0A48_03545	B0A48_15857	A0A1V8TKQ5	A0A1V8S9T4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Nuclear cap-binding protein subunit 2.	0.979
B0A48_03545	B0A48_16383	A0A1V8TKQ5	A0A1V8SE25	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.966
B0A48_03545	B0A48_17309	A0A1V8TKQ5	A0A1V8SC71	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.974
B0A48_03545	B0A48_18474	A0A1V8TKQ5	A0A1V8S822	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.992
B0A48_03545	B0A48_18606	A0A1V8TKQ5	A0A1V8S8C3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.992
B0A48_03545	B0A48_18745	A0A1V8TKQ5	A0A1V8S8B3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	mRNA_cap_enzyme domain-containing protein.	0.693
B0A48_04930	B0A48_01538	A0A1V8TE64	A0A1V8TPL1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	mRNA cap guanine-N7 methyltransferase.	0.966