STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF46301.1Ferredoxin. (103 aa)    
Predicted Functional Partners:
SME99767.1
Cytochrome P450.
  
 0.999
SMF64151.1
Polyketide synthase dehydratase.
   
 0.964
SMF47279.1
Nitrogen fixation protein NifU.
  
 0.959
SMF56729.1
2,4-dienoyl-CoA reductase.
   
 0.949
SMF10975.1
Cytochrome P450.
  
 0.945
SMF43419.1
Cytochrome P450.
  
 0.945
SMF43705.1
Hypothetical protein; Belongs to the cytochrome P450 family.
  
 0.945
SMF74083.1
Cytochrome P450.
  
 0.945
SMF78117.1
Sulfite reductase (NADPH) beta subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 0.939
SMF00090.1
Response regulator receiver domain-containing protein.
  
 0.936
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
Server load: low (16%) [HD]