STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF82228.1Cytochrome c peroxidase. (471 aa)    
Predicted Functional Partners:
SMF53562.1
DNA-binding beta-propeller fold protein YncE.
 
 
 0.872
SMF40524.1
OmpA family protein.
  
 
 0.852
SMF17623.1
DNA-binding beta-propeller fold protein YncE.
  
 
 0.851
SMF71787.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
 
 0.851
SMF01735.1
PA14 domain-containing protein.
  
 
 0.850
SMF03221.1
PA14 domain-containing protein.
  
 
 0.850
SMF11879.1
DNA-binding beta-propeller fold protein YncE.
  
 
 0.850
SMF22678.1
PA14 domain-containing protein.
  
 
 0.850
SMF42830.1
PA14 domain-containing protein.
  
 
 0.850
SMF62033.1
Collagen triple helix repeat-containing protein.
  
 
 0.850
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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