STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ37_00205Ferrous iron transporter B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (851 aa)    
Predicted Functional Partners:
HQ37_03475
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.809
HQ37_03150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.798
HQ37_01260
Homoserine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AB hydrolase superfamily. MetX family.
  
  
 0.652
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
      
 0.613
HQ37_00890
Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.573
HQ37_05770
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.571
HQ37_03850
Ferritin; Iron-storage protein.
     
 0.561
HQ37_01980
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
 
 0.551
cbiA
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
    0.526
HQ37_01985
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.517
Your Current Organism:
Porphyromonas sp. COT239OH1446
NCBI taxonomy Id: 1515613
Other names: P. sp. COT-239 OH1446, Porphyromonas sp. COT-239 OH1446, Porphyromonas sp. COT-239_OH1446
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.