STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO53045.1Hypothetical protein. (357 aa)    
Predicted Functional Partners:
SFO12347.1
Ribonucleoside-triphosphate reductase class III catalytic subunit.
   
 
  0.822
SFO18212.1
Ribonucleoside-diphosphate reductase alpha chain.
   
 
  0.794
SFO40557.1
Stage II sporulation protein R (spore_II_R).
  
     0.610
SFO59425.1
Similar to stage IV sporulation protein.
  
     0.551
SFO53058.1
Tetratricopeptide repeat-containing protein.
       0.518
SFO69561.1
Undecaprenyl diphosphate synthase.
  
     0.511
SFO16764.1
Stage III sporulation protein AA.
  
     0.497
SFO43459.1
Transcriptional regulator, AbrB family.
  
     0.467
SFO03990.1
dCMP deaminase.
     
 0.462
SFO46126.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
     0.460
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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