STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM19074.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
SDM19054.1
Predicted arabinose efflux permease, MFS family.
       0.773
SDM19086.1
Methyltransferase domain-containing protein.
       0.727
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.611
parE
Topoisomerase-4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
       0.557
SDM19120.1
Beta-barrel assembly machine subunit BamC.
       0.470
SDM19145.1
Phosphoribosyl 1,2-cyclic phosphodiesterase.
       0.470
parC
Topoisomerase-4 subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
       0.403
Your Current Organism:
Oryzisolibacter propanilivorax
NCBI taxonomy Id: 1527607
Other names: Alicycliphilus sp. EPL6, Alicycliphilus sp. LMG 28427, CECT 8927, LMG 28427, LMG:28427, O. propanilivorax, Oryzisolibacter propanilivorax Vaz-Moreira et al. 2017, strain EPL6
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