AJC12079.1 protein (Coriobacteriaceae bacterium 6813)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJC12079.1

Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)

Predicted Functional Partners:

AJC12358.1

0.703

AJC11675.1

0.557

AJC12078.1

0.518

AJC12080.1

0.449

AJC11451.1

0.442

AJC12660.1

0.406

AJC12714.1

0.406

Your Current Organism:

Coriobacteriaceae bacterium 6813

NCBI taxonomy Id: 1531429
Other names: C. bacterium 68-1-3, Coriobacteriaceae bacterium 68-1-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC11451.1	AJC11675.1	JI75_00785	JI75_02245	Citrate synthase; Catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AJC11451.1	AJC12079.1	JI75_00785	JI75_04740	Citrate synthase; Catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AJC11451.1	AJC12358.1	JI75_00785	JI75_06520	Citrate synthase; Catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AJC11675.1	AJC11451.1	JI75_02245	JI75_00785	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Citrate synthase; Catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AJC11675.1	AJC12079.1	JI75_02245	JI75_04740	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJC11675.1	AJC12358.1	JI75_02245	JI75_06520	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AJC11675.1	AJC12660.1	JI75_02245	JI75_08380	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJC11675.1	AJC12714.1	JI75_02245	JI75_08680	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJC12078.1	AJC12079.1	JI75_04735	JI75_04740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AJC12079.1	AJC11451.1	JI75_04740	JI75_00785	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Citrate synthase; Catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AJC12079.1	AJC11675.1	JI75_04740	JI75_02245	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJC12079.1	AJC12078.1	JI75_04740	JI75_04735	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AJC12079.1	AJC12080.1	JI75_04740	JI75_04745	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJC12079.1	AJC12358.1	JI75_04740	JI75_06520	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AJC12079.1	AJC12660.1	JI75_04740	JI75_08380	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AJC12079.1	AJC12714.1	JI75_04740	JI75_08680	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AJC12080.1	AJC12079.1	JI75_04745	JI75_04740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJC12358.1	AJC11451.1	JI75_06520	JI75_00785	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Citrate synthase; Catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AJC12358.1	AJC11675.1	JI75_06520	JI75_02245	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AJC12358.1	AJC12079.1	JI75_06520	JI75_04740	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703