STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_4456Hypothetical protein CHU_3271. (398 aa)    
Predicted Functional Partners:
MYP_4457
Hypothetical protein Ftrac_2008.
 
   
 0.832
MYP_2206
Hypothetical protein.
 
     0.780
MYP_4458
Hypothetical protein.
       0.773
MYP_4459
Hypothetical protein.
 
     0.773
MYP_4829
Hypothetical protein Hsw_0347.
  
     0.683
MYP_1371
DoxX family protein.
  
     0.637
MYP_933
uroporphyrinogen-III synthase.
  
     0.624
MYP_499
Hypothetical protein CHU_2771.
 
     0.616
MYP_1024
Hypothetical protein.
  
     0.615
MYP_318
Hypothetical protein.
 
     0.597
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.