STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumB_1Fumarate hydratase%2C class I. (168 aa)    
Predicted Functional Partners:
CUN76716.1
Fumarase.
 
 
 0.983
ttdA_2
Fe-S type%2C tartrate/fumarate subfamily hydro-lyase subunit alpha.
 
 
 0.948
ttdA_1
hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C subunit alpha.
 
 
 0.940
frdA
Oxidoreductase.
  
 
 0.884
porA_1
Pyruvate ferredoxin/flavodoxin oxidoreductase.
    
 0.846
argH
Argininosuccinate lyase.
    
 0.830
CUO36029.1
Pyruvate carboxylase.
    
 0.821
nuoF2
NADH-quinone oxidoreductase subunit F 2.
  
 
 0.815
PckA
Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
 
 0.810
ldh_1
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.809
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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