STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appA_1Extracellular solute-binding protein. (570 aa)    
Predicted Functional Partners:
appC
Oligopeptide ABC transporter.
 0.928
dppB_2
Binding-protein-dependent transport system inner membrane protein.
 0.927
gsiD_1
ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components.
 0.917
gsiD_4
Glutathione transport system permease protein GsiD.
 0.899
gsiD_5
ABC transporter permease.
 0.898
dppB_3
Putative oligopeptide ABC transporter permease.
 0.894
ddpC_1
Binding-protein-dependent transport system inner membrane protein.
 0.892
dppB_1
ABC-type dipeptide/oligopeptide/nickel transport systems%2C permease components.
 0.891
nikB
Transport system permease%2C nickel or dipeptide.
 0.889
gsiC_4
Dipeptide/oligopeptide/nickel ABC transporter permease.
 0.889
Your Current Organism:
Hungatella hathewayi
NCBI taxonomy Id: 154046
Other names: CCUG 43506, Clostridium hathewayi, Clostridium hathewayi Steer et al. 2002, DSM 13479, H. hathewayi, Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014, MTCC 10951
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.