STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS08560.1Superfamily I DNA and RNA helicase. (774 aa)    
Predicted Functional Partners:
AIS08837.1
ATP-dependent DNA helicase UvrD/PcrA.
    
 0.927
AIS09668.1
DNA-directed RNA polymerase beta subunit.
    
 
 0.850
AIS09667.1
DNA-directed RNA polymerase beta' subunit.
    
 
 0.832
AIS09724.1
DNA-directed RNA polymerase delta subunit.
  
 
 
 0.795
AIS08561.1
GNAT family acetyltransferase YjcF.
       0.769
AIS09418.1
DNA-directed RNA polymerase omega subunit.
   
   0.712
AIS09635.1
DNA-directed RNA polymerase alpha subunit.
    
   0.712
AIS08779.1
Hypothetical protein.
  
     0.664
AIS09133.1
Hypothetical protein DUF1447.
    
   0.608
AIS08558.1
Hypothetical protein.
  
    0.542
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.