STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS09244.1ABC transporter, ATP-binding protein. (234 aa)    
Predicted Functional Partners:
AIS09243.1
Hypothetical protein.
 
     0.869
AIS09240.1
Transcriptional regulator, GntR family.
 
     0.839
AIS09245.1
Transcriptional regulator, GntR family.
       0.788
AIS08398.1
ABC-type Na+ efflux pump, permease component.
 
  
 0.745
AIS09242.1
Hypothetical protein.
 
     0.724
AIS09241.1
Hypothetical protein.
       0.503
AIS09246.1
ABC transporter, permease protein.
 
     0.493
AIS09248.1
ABC transporter ATP-binding protein.
    
0.457
AIS09247.1
ABC transporter, permease protein.
       0.406
Your Current Organism:
Lactobacillus sp. wkB8
NCBI taxonomy Id: 1545702
Other names: L. sp. wkB8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.