STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKJ75954.1Gamma-butyrobetaine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)    
Predicted Functional Partners:
KKJ75955.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.994
lcdH
Hypothetical protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.775
KKJ75956.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
   
 
  0.659
KKJ77436.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.656
KKJ75953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
 
     0.643
KKJ75829.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.629
KKJ76147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.603
KKJ78538.1
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.549
KKJ78752.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.549
Your Current Organism:
Kiloniella litopenaei
NCBI taxonomy Id: 1549748
Other names: K. litopenaei, Kiloniella sp. P1-1, LMG 27755, LMG:27755, MCCC 1A09869, strain P1-1
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