STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgcFOrf, hypothetical protein; Catalyzes the synthesis of cyclic-di-GMP (c-di-GMP) via the condensation of 2 GTP molecules. (315 aa)    
Predicted Functional Partners:
yahA
Orf, hypothetical protein; Residues 4 to 365 of 365 are 93.09 pct identical to residues 1 to 362 of 362 from Escherichia coli K-12 Strain MG1655: B0315.
 
  
 0.940
yjcC
Orf, hypothetical protein; Residues 1 to 528 of 528 are 98.29 pct identical to residues 1 to 528 of 528 from Escherichia coli K-12 Strain MG1655: B4061.
 
   
 0.889
yfgF
Putative cytochrome C-type biogenesis protein; Residues 1 to 747 of 747 are 99.33 pct identical to residues 1 to 747 of 747 from Escherichia coli K-12 Strain MG1655: B2503.
 
  
 0.866
yhjK
Orf, hypothetical protein; Residues 1 to 651 of 651 are 99.23 pct identical to residues 1 to 651 of 651 from Escherichia coli K-12 Strain MG1655: B3529.
  
  
 0.840
yliE
Orf, hypothetical protein; Residues 1 to 782 of 782 are 99.36 pct identical to residues 1 to 782 of 782 from Escherichia coli K-12 Strain MG1655: B0833.
  
  
 0.818
Z1528
Hypothetical protein; Residues 35 to 532 of 536 are 31.11 pct identical to residues 8 to 509 of 518 from GenPept 118 : gi|1788502|gb|AAC75237.1| (AE000307) orf, hypothetical protein [Escherichia coli].
 
   
 0.817
Z2221
Hypothetical protein; Residues 1 to 367 of 367 are 98.63 pct identical to residues 441 to 807 of 807 from Escherichia coli K-12 Strain MG1655: B1489.
 
 
 0.816
yhjH
Orf, hypothetical protein; Residues 1 to 255 of 255 are 99.60 pct identical to residues 2 to 256 of 256 from Escherichia coli K-12 Strain MG1655: B3525.
  
  
 0.814
yoaD
Orf, hypothetical protein; Residues 1 to 542 of 542 are 99.07 pct identical to residues 1 to 542 of 542 from Escherichia coli K-12 Strain MG1655: B1815.
 
  
 0.807
rtn
Orf, hypothetical protein; Residues 1 to 518 of 518 are 99.42 pct identical to residues 1 to 518 of 518 from Escherichia coli K-12 Strain MG1655: B2176.
 
  
 0.796
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.