STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedOPutative 1-aminocyclopropane-1-carboxylate deaminase; Catalyzes the alpha,beta-elimination reaction of D-cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine; Belongs to the ACC deaminase/D-cysteine desulfhydrase family. (360 aa)    
Predicted Functional Partners:
malY
Enzyme that may degrade or block biosynthesis of endogenous mal inducer, probably aminotrasferase; Residues 1 to 390 of 390 are 99.23 pct identical to residues 1 to 390 of 390 from Escherichia coli K-12 Strain MG1655: B1622.
    
  0.905
metC
Cystathionine beta-lyase (beta-cystathionase); Residues 1 to 395 of 395 are 98.48 pct identical to residues 1 to 395 of 395 from Escherichia coli K-12 Strain MG1655: B3008.
     
 0.902
sseA
Putative thiosulfate sulfurtransferase; Transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity. Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity.
     
  0.900
fliY
Putative periplasmic binding transport protein; Residues 1 to 266 of 266 are 99.62 pct identical to residues 1 to 266 of 266 from Escherichia coli K-12 Strain MG1655: B1920; Belongs to the bacterial solute-binding protein 3 family.
  
  
 0.894
yecS
Putative transport system permease protein (former yecC); Residues 1 to 222 of 222 are 99.54 pct identical to residues 1 to 222 of 222 from Escherichia coli K-12 Strain MG1655: B1918.
  
  
 0.866
yecC
Putative ATP-binding component of a transport system; Residues 1 to 250 of 250 are 99.59 pct identical to residues 1 to 250 of 250 from Escherichia coli K-12 Strain MG1655: B1917.
  
  
 0.817
fliZ
Orf, hypothetical protein; Residues 1 to 195 of 195 are 98.97 pct identical to residues 1 to 195 of 195 from Escherichia coli K-12 Strain MG1655: B1921.
       0.582
fliA
Flagellar biosynthesis; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
       0.550
fliC
Flagellar biosynthesis; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
     
 0.466
yhiV
Putative transport system permease protein; Part of the tripartite efflux system MdtEF-TolC, which confers resistance to various compounds.
      
 0.461
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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