STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedPOrf, hypothetical protein; Residues 1 to 271 of 271 are 98.89 pct identical to residues 1 to 271 of 271 from Escherichia coli K-12 Strain MG1655: B1955. (271 aa)    
Predicted Functional Partners:
Z2476
Hypothetical protein; Residues 1 to 111 of 124 are 100.00 pct identical to residues 10 to 120 of 568 from Escherichia coli K-12 Strain MG1655: B1309.
 
     0.772
ycjM
Putative polysaccharide hydrolase; Residues 1 to 434 of 434 are 95.39 pct identical to residues 135 to 568 of 568 from Escherichia coli K-12 Strain MG1655: B1309.
 
     0.739
accC
Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
 0.738
yhaK
Orf, hypothetical protein; Does not have quercetin 2,3-dioxygenase activity.
      
 0.722
nrdF
Ribonucleoside-diphosphate reductase 2, beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
      
 0.721
yodD
Orf, hypothetical protein; Residues 1 to 80 of 80 are 100.00 pct identical to residues 1 to 80 of 80 from Escherichia coli K-12 Strain MG1655: B1953.
  
    0.712
yegP
Orf, hypothetical protein; Residues 1 to 123 of 123 are 97.56 pct identical to residues 1 to 123 of 123 from Escherichia coli K-12 Strain MG1655: B2080; Belongs to the UPF0339 family. Duplicated subfamily.
   
    0.612
ygaM
Orf, hypothetical protein; Residues 1 to 113 of 113 are 100.00 pct identical to residues 1 to 113 of 113 from Escherichia coli K-12 Strain MG1655: B2672; Belongs to the ElaB/YgaM/YqjD family.
  
    0.575
yfcG
Putative S-transferase; Residues 1 to 215 of 215 are 99.06 pct identical to residues 1 to 215 of 215 from Escherichia coli K-12 Strain MG1655: B2302; Belongs to the GST superfamily.
   
    0.516
ybhP
Orf, hypothetical protein; Residues 1 to 253 of 253 are 100.00 pct identical to residues 1 to 253 of 253 from Escherichia coli K-12 Strain MG1655: B0790.
   
    0.503
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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