STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqfAPutative oxidoreductase; Residues 1 to 219 of 219 are 100.00 pct identical to residues 1 to 219 of 219 from Escherichia coli K-12 Strain MG1655: B2899. (219 aa)    
Predicted Functional Partners:
ascF
PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides; Residues 1 to 485 of 485 are 97.93 pct identical to residues 1 to 485 of 485 from Escherichia coli K-12 Strain MG1655: B2715.
      
 0.721
ascB
6-phospho-beta-glucosidase; Residues 1 to 474 of 474 are 97.89 pct identical to residues 1 to 474 of 474 from Escherichia coli K-12 Strain MG1655: B2716; Belongs to the glycosyl hydrolase 1 family.
  
   
 0.685
yqfB
Orf, hypothetical protein; Residues 1 to 103 of 103 are 100.00 pct identical to residues 1 to 103 of 103 from Escherichia coli K-12 Strain MG1655: B2900; Belongs to the UPF0267 family.
       0.467
ribD
Bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.447
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.436
acrR
acrAB operon repressor; Residues 1 to 215 of 215 are 99.53 pct identical to residues 1 to 215 of 215 from Escherichia coli K-12 Strain MG1655: B0464.
  
   
 0.425
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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