STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhaMHypothetical protein; Thought to be a D-serine dehydratase, however it does not complement a dsdA (D-serine dehydratase) mutant in strain CFT073, suggesting it may not have that function. (436 aa)    
Predicted Functional Partners:
yhaO
Putative transport system permease protein; Transports both D- and L-serine; allows growth of strain CFT073 cells normally unable to transport D-serine on that substrate. Transport relies on the H(+) gradient and is not competed by L- threonine. May play a role in L-cysteine detoxification (By similarity).
 
  
 0.976
ygbA
Orf, hypothetical protein; Residues 1 to 117 of 117 are 98.29 pct identical to residues 1 to 117 of 117 from Escherichia coli K-12 Strain MG1655: B2732.
 
   
 0.466
ydcX
Hypothetical protein; Residues 1 to 73 of 73 are 98.63 pct identical to residues 10 to 82 of 82 from Escherichia coli K-12 Strain MG1655: B1445.
      
 0.463
yeaR
Hypothetical protein; Residues 1 to 119 of 119 are 100.00 pct identical to residues 1 to 119 of 119 from Escherichia coli K-12 Strain MG1655: B1797.
      
 0.463
nrdA
Ribonucleoside diphosphate reductase 1, alpha subunit, B1; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
      
 0.463
hcr
Putative enzyme; Residues 1 to 322 of 322 are 98.75 pct identical to residues 1 to 322 of 322 from Escherichia coli K-12 Strain MG1655: B0872.
      
 0.461
yoaG
Orf, hypothetical protein; Residues 1 to 60 of 60 are 100.00 pct identical to residues 1 to 60 of 60 from Escherichia coli K-12 Strain MG1655: B1796.
      
 0.461
yhjV
Putative transporter protein; Residues 1 to 423 of 423 are 99.05 pct identical to residues 1 to 423 of 423 from Escherichia coli K-12 Strain MG1655: B3539.
 
  
 0.443
yhaR
Orf, hypothetical protein; Residues 1 to 150 of 150 are 99.33 pct identical to residues 1 to 150 of 150 from Escherichia coli K-12 Strain MG1655: B3113.
 
     0.428
yjjI
Orf, hypothetical protein; Residues 1 to 516 of 516 are 99.22 pct identical to residues 1 to 516 of 516 from Escherichia coli K-12 Strain MG1655: B4380.
  
   
 0.404
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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