node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
nusA | rplQ | Z4530 | Z4664 | Transcription pausing; Participates in both transcription termination and antitermination. | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | 0.826 |
nusA | rpoA | Z4530 | Z4665 | Transcription pausing; Participates in both transcription termination and antitermination. | RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
nusA | rpoB | Z4530 | Z5560 | Transcription pausing; Participates in both transcription termination and antitermination. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
nusA | rpoC | Z4530 | Z5561 | Transcription pausing; Participates in both transcription termination and antitermination. | RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.975 |
nusA | rpoD | Z4530 | Z4420 | Transcription pausing; Participates in both transcription termination and antitermination. | RNA polymerase, sigma(70) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.944 |
nusA | rpoZ | Z4530 | Z5075 | Transcription pausing; Participates in both transcription termination and antitermination. | RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | 0.895 |
nusA | rpsD | Z4530 | Z4666 | Transcription pausing; Participates in both transcription termination and antitermination. | 30S ribosomal subunit protein S4; One of two assembly initiator proteins for the 30S subunit, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. Protein S4 is also a translational repressor protein, it controls the translation of the alpha-operon (which codes for S13, S11, S4, RNA polymerase alpha subunit, and L17) by binding to its mRNA. | 0.947 |
nusA | rpsE | Z4530 | Z4673 | Transcription pausing; Participates in both transcription termination and antitermination. | 30S ribosomal subunit protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.953 |
nusA | rpsK | Z4530 | Z4667 | Transcription pausing; Participates in both transcription termination and antitermination. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome (By similarity); Belongs to the universal ribosomal protein uS11 family. | 0.941 |
nusA | rpsM | Z4530 | Z4668 | Transcription pausing; Participates in both transcription termination and antitermination. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the E.coli 70S ribosome in the initiation state it has been modeled to contact the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; bridge B1a is broken in the model with bound EF-G, while the protein-protein contacts between S13 and L5 in B1b change. Contacts the tRNAs in the A and P sites (By similarity); Belongs to the universal ribosomal protein uS13 family. | 0.920 |
rplQ | nusA | Z4664 | Z4530 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | Transcription pausing; Participates in both transcription termination and antitermination. | 0.826 |
rplQ | rpoA | Z4664 | Z4665 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rplQ | rpoB | Z4664 | Z5560 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.972 |
rplQ | rpoC | Z4664 | Z5561 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.977 |
rplQ | rpoZ | Z4664 | Z5075 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). | 0.794 |
rplQ | rpsD | Z4664 | Z4666 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | 30S ribosomal subunit protein S4; One of two assembly initiator proteins for the 30S subunit, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. Protein S4 is also a translational repressor protein, it controls the translation of the alpha-operon (which codes for S13, S11, S4, RNA polymerase alpha subunit, and L17) by binding to its mRNA. | 0.998 |
rplQ | rpsE | Z4664 | Z4673 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | 30S ribosomal subunit protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.997 |
rplQ | rpsK | Z4664 | Z4667 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome (By similarity); Belongs to the universal ribosomal protein uS11 family. | 0.997 |
rplQ | rpsM | Z4664 | Z4668 | 50S ribosomal subunit protein L17; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3294. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the E.coli 70S ribosome in the initiation state it has been modeled to contact the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; bridge B1a is broken in the model with bound EF-G, while the protein-protein contacts between S13 and L5 in B1b change. Contacts the tRNAs in the A and P sites (By similarity); Belongs to the universal ribosomal protein uS13 family. | 0.998 |
rpoA | nusA | Z4665 | Z4530 | RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcription pausing; Participates in both transcription termination and antitermination. | 0.998 |