STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tufAProtein chain elongation factor EF-Tu (duplicate of tufB); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (394 aa)    
Predicted Functional Partners:
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.999
rpsB
30S ribosomal subunit protein S2; Residues 1 to 241 of 241 are 100.00 pct identical to residues 1 to 241 of 241 from Escherichia coli K-12 Strain MG1655: B0169.
   
 0.999
tsf
Protein chain elongation factor EF-Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity).
   
 0.999
rpmF
50S ribosomal subunit protein L32; Residues 1 to 57 of 57 are 100.00 pct identical to residues 1 to 57 of 57 from Escherichia coli K-12 Strain MG1655: B1089; Belongs to the bacterial ribosomal protein bL32 family.
   
 0.999
rplT
50S ribosomal subunit protein L20, and regulator; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).
   
 0.999
rpmI
50S ribosomal subunit protein A; Residues 1 to 65 of 65 are 100.00 pct identical to residues 1 to 65 of 65 from Escherichia coli K-12 Strain MG1655: B1717; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.999
rplY
50S ribosomal subunit protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
   
 
 0.999
rplS
50S ribosomal subunit protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 0.999
rpsP
30S ribosomal subunit protein S16; In addition to being a ribosomal protein, S16 also has a cation-dependent endonuclease activity.
   
 0.999
rpsU
30S ribosomal subunit protein S21; Residues 1 to 71 of 71 are 100.00 pct identical to residues 1 to 71 of 71 from Escherichia coli K-12 Strain MG1655: B3065; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.999
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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