STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yibLOrf, hypothetical protein; Residues 1 to 120 of 120 are 100.00 pct identical to residues 1 to 120 of 120 from Escherichia coli K-12 Strain MG1655: B3602. (120 aa)    
Predicted Functional Partners:
yhhN
Putative enzyme; Residues 1 to 208 of 208 are 99.51 pct identical to residues 1 to 208 of 208 from Escherichia coli K-12 Strain MG1655: B3468.
  
     0.728
ompX
Outer membrane protein X; Residues 1 to 171 of 171 are 100.00 pct identical to residues 1 to 171 of 171 from Escherichia coli K-12 Strain MG1655: B0814.
  
     0.712
ygdR
Orf, hypothetical protein; Residues 1 to 72 of 72 are 100.00 pct identical to residues 1 to 72 of 72 from Escherichia coli K-12 Strain MG1655: B2833.
  
     0.696
ybaY
Glycoprotein/polysaccharide metabolism; Residues 1 to 190 of 190 are 99.47 pct identical to residues 1 to 190 of 190 from Escherichia coli K-12 Strain MG1655: B0453.
  
     0.679
yqjK
Orf, hypothetical protein; Residues 1 to 99 of 99 are 98.98 pct identical to residues 1 to 99 of 99 from Escherichia coli K-12 Strain MG1655: B3100.
  
     0.659
osmE
Activator of ntrL gene; Residues 1 to 112 of 112 are 100.00 pct identical to residues 1 to 112 of 112 from Escherichia coli K-12 Strain MG1655: B1739.
  
    0.646
yjjQ
Putative regulator; Residues 1 to 241 of 241 are 100.00 pct identical to residues 1 to 241 of 241 from Escherichia coli K-12 Strain MG1655: B4365.
  
     0.639
ygdI
Orf, hypothetical protein; Residues 1 to 76 of 76 are 100.00 pct identical to residues 1 to 76 of 76 from Escherichia coli K-12 Strain MG1655: B2809.
  
     0.629
mtlR
Repressor for mtl; Residues 1 to 195 of 195 are 99.48 pct identical to residues 1 to 195 of 195 from Escherichia coli K-12 Strain MG1655: B3601.
 
     0.628
spy
Periplasmic protein related to spheroblast formation; An ATP-independent periplasmic chaperone, decreases protein aggregation and helps protein refolding. Binds substrate over a large region. Protect proteins in vitro against tannin inactivation; tannins have antimicrobial activity. Overexpression enhances the stability of otherwise unstable periplasmic proteins. Belongs to the CpxP/Spy family.
  
     0.623
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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