STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylEXylose-proton symport; Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Glucose is not transported, but can compete for xylose binding sites and can inhibit xylose transport (in vitro) (By similarity). Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (491 aa)    
Predicted Functional Partners:
fucP
Fucose permease; Residues 1 to 438 of 438 are 99.77 pct identical to residues 1 to 438 of 438 from Escherichia coli K-12 Strain MG1655: B2801.
  
   
 0.875
xylA
D-xylose isomerase; Residues 1 to 440 of 440 are 99.54 pct identical to residues 1 to 440 of 440 from Escherichia coli K-12 Strain MG1655: B3565; Belongs to the xylose isomerase family.
 
   
 0.833
lacY
Galactoside permease (M protein); Residues 1 to 417 of 417 are 99.76 pct identical to residues 1 to 417 of 417 from Escherichia coli K-12 Strain MG1655: B0343.
  
   
 0.828
xylB
Xylulokinase; Residues 1 to 484 of 484 are 99.38 pct identical to residues 1 to 484 of 484 from Escherichia coli K-12 Strain MG1655: B3564.
  
  
 0.803
xylF
Xylose binding protein transport system; Residues 1 to 330 of 330 are 99.39 pct identical to residues 1 to 330 of 330 from Escherichia coli K-12 Strain MG1655: B3566.
      
 0.797
xylG
Putative ATP-binding protein of xylose transport system; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
      
 0.770
xylR
Putative regulator of xyl operon; Regulatory protein for the xylBAFGHR operon.
     
 0.642
yajR
Putative transport protein; Residues 1 to 456 of 456 are 98.90 pct identical to residues 1 to 456 of 456 from Escherichia coli K-12 Strain MG1655: B0427.
      
 0.574
mhpT
Putative transport protein; Residues 1 to 418 of 418 are 99.28 pct identical to residues 1 to 418 of 418 from Escherichia coli K-12 Strain MG1655: B0353.
  
     0.496
ybdS
Putative a membrane protein; Responsible for the uptake of citrate in exchange to the efflux of succinate. Has a relatively broad specificity for C(4)- dicarboxylates and tricarboxylates (By similarity); Belongs to the SLC13A/DASS transporter (TC 2.A.47) family. DIT1 subfamily.
      
 0.476
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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