STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSS42120.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
OSS42119.1
Type 4 fimbrial assembly, ATPase PilB.
  
 0.912
OSS42122.1
Hypothetical protein.
 
     0.900
OSS42118.1
Type 4 fimbrial assembly protein PilC.
  
  
 0.892
OSS42113.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
 
  
 0.847
OSS42117.1
MSHA biogenesis protein MshM.
 
    0.818
OSS42112.1
Hypothetical protein.
       0.773
OSS42114.1
Hypothetical protein.
       0.773
OSS42115.1
Hypothetical protein.
       0.773
OSS42116.1
Hypothetical protein.
       0.773
OSS41900.1
Type 4 fimbrial assembly, ATPase PilB.
  
 0.630
Your Current Organism:
Desulfurella amilsii
NCBI taxonomy Id: 1562698
Other names: D. amilsii, DSM 29984, Desulfurella amilsii Florentino et al. 2016, Desulfurella sp. TR1, JCM 30680, strain TR1
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