STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icd1Isocitrate dehydrogenase [NADP]; High confidence in function and specificity; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (409 aa)    
Predicted Functional Partners:
aco2
Putative aconitate hydratase, mitochondrial; High confidence in function and specificity.
  
 0.984
odhA
2-oxoglutarate dehydrogenase E1 component; High confidence in function and specificity.
   
 
 0.956
icd3
Isocitrate dehydrogenase [NADP]; High confidence in function and specificity.
    
  0.947
CEA16419.1
Citrate synthase; High confidence in function and specificity; Belongs to the citrate synthase family.
  
 
 0.937
CEA15169.1
Hypothetical protein.
   
 
 0.935
korA
2-oxoglutarate oxidoreductase subunit KorA; High confidence in function and specificity.
   
 
 0.925
gltB
Ferredoxin-dependent glutamate synthase 1; High confidence in function and specificity.
    
 0.912
vorB
Ketoisovalerate oxidoreductase subunit VorB; High confidence in function and specificity.
   
 
 0.909
CEA15172.1
Hypothetical protein; High confidence in function and specificity.
     
 0.906
korB
2-oxoglutarate oxidoreductase subunit KorB; High confidence in function and specificity.
     
 0.906
Your Current Organism:
Fermentimonas caenicola
NCBI taxonomy Id: 1562970
Other names: CECT 8609, DSM 28696, F. caenicola, Fermentimonas caenicola Hahnke et al. 2016, LMG 28429, LMG:28429, Porphyromonadaceae bacterium ING2-E5B, strain E5B, strain ING2-E5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.