STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureFUrease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. (231 aa)    
Predicted Functional Partners:
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.997
ureC
TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; KEGG: sme:SMc01837 urease alpha subunit protein; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 
 
 0.997
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
  
 0.997
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.995
ureA
KEGG: rpb:RPB_1800 urease, gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region; Belongs to the urease gamma subunit family.
 
 
 0.992
ureB
KEGG: rsp:RSP_0308 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; Belongs to the urease beta subunit family.
 
 
 0.982
Mmc1_2488
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: tbd:Tbd_1383 hydrogenase accessory protein HypB.
  
 
 0.940
Mmc1_1020
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; PBS lyase HEAT domain protein repeat-containing protein; KEGG: sme:SMb20604 putative ureashort-chain amide or branched-chain amino acid uptake ABC transporter permease protein, possibly fusion protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.828
Mmc1_1021
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: hch:HCH_04516 ABC-type branched-chain amino acid transport system, permease component; TC 3.A.1.4.-.
 
   
 0.825
Mmc1_1023
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_04514 ABC-type branched-chain amino acid transport system, ATPase component; TC 3.A.1.4.-.
 
   
 0.815
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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